s/scisoft/coderefinery/

AUTHORS.md

@@ -10,4 +10,4 @@
 - Dan Jonsson (idea for configuration file approach)
 - Roberto Di Remigio (design ideas and testing, OS X testing, Boost)
 
-For a list of all the contributions see https://github.com/scisoft/autocmake/contributors.
+For a list of all the contributions see https://github.com/coderefinery/autocmake/contributors.

README.md

@@ -1,4 +1,4 @@
-[![Build Status](https://travis-ci.org/scisoft/autocmake.svg?branch=master)](https://travis-ci.org/scisoft/autocmake/builds)
+[![Build Status](https://travis-ci.org/coderefinery/autocmake.svg?branch=master)](https://travis-ci.org/coderefinery/autocmake/builds)
 [![Documentation Status](https://readthedocs.org/projects/autocmake/badge/?version=latest)](http://autocmake.readthedocs.org)
 [![License](https://img.shields.io/badge/license-%20BSD--3-blue.svg)](../master/LICENSE)
 

doc/contributors/doc.rst

@@ -10,11 +10,11 @@ This documentation is refreshed upon each push to the central repository.
 The module reference documentation is generated from the module sources using
 ``#.rst:`` tags (compare for instance
 http://autocmake.readthedocs.org/en/latest/module-reference.html#cc-cmake with
-https://github.com/scisoft/autocmake/blob/master/modules/cc.cmake).
+https://github.com/coderefinery/autocmake/blob/master/modules/cc.cmake).
 
 Please note that the lines following ``# autocmake.cfg configuration::`` are
 understood by the ``update.py`` script to infer autocmake.cfg code from the
 documentation.  As an example consider
-https://github.com/scisoft/autocmake/blob/master/modules/cc.cmake#L20-L25.
+https://github.com/coderefinery/autocmake/blob/master/modules/cc.cmake#L20-L25.
 Here, ``update.py`` will infer the configurations for ``docopt``, ``export``,
 and ``define``.

doc/contributors/testing.rst

@@ -5,7 +5,7 @@ Testing Autocmake
 
 You will need to install `pytest <http://pytest.org/>`__.
 
-Check also the `Travis  <https://github.com/scisoft/autocmake/blob/master/.travis.yml>`__
+Check also the `Travis  <https://github.com/coderefinery/autocmake/blob/master/.travis.yml>`__
 build and test recipe for other requirements.
 
 Your contributions and changes should preserve the test set. You can run locally all tests with::
@@ -19,5 +19,5 @@ You can also select individual tests, for example those with ``fc_blas`` string
 For more options, see the ``py.test`` flags.
 
 This test set is run upon each push to the central repository.
-See also the `Travis <https://travis-ci.org/scisoft/autocmake/builds>`__
+See also the `Travis <https://travis-ci.org/coderefinery/autocmake/builds>`__
 build and test history.

doc/developers/bootstrap.rst

@@ -12,12 +12,12 @@ infrastructure files which will be needed to build the project::
 
   $ mkdir cmake  # does not have to be called "cmake" - take the name you prefer
   $ cd cmake
-  $ wget https://github.com/scisoft/autocmake/raw/master/update.py
+  $ wget https://github.com/coderefinery/autocmake/raw/master/update.py
   $ python update.py --self
 
 On the MS Windows system, you can use the PowerShell wget-replacement::
 
-  $ Invoke-WebRequest https://github.com/scisoft/autocmake/raw/master/update.py -OutFile update.py
+  $ Invoke-WebRequest https://github.com/coderefinery/autocmake/raw/master/update.py -OutFile update.py
 
 This creates (or updates) the following files (an existing ``autocmake.cfg`` is
 not overwritten by the script)::

doc/developers/configuration.rst

@@ -13,38 +13,38 @@ below::
   min_cmake_version: 2.8
 
   [fc]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/fc.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/fc.cmake
 
   [cc]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/cc.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/cc.cmake
 
   [cxx]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/cxx.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/cxx.cmake
 
   [flags]
-  source: https://github.com/scisoft/autocmake/raw/master/compilers/GNU.CXX.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/compilers/GNU.CXX.cmake
-          https://github.com/scisoft/autocmake/raw/master/compilers/Intel.CXX.cmake
+          https://github.com/coderefinery/autocmake/raw/master/compilers/Intel.CXX.cmake
 
   [rpath]
   source: custom/rpath.cmake
 
   [definitions]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/definitions.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/definitions.cmake
 
   [coverage]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/code_coverage.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/code_coverage.cmake
 
   [safeguards]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/safeguards.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/safeguards.cmake
 
   [default_build_paths]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/default_build_paths.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/default_build_paths.cmake
 
   [src]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/src.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/src.cmake
 
   [googletest]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/googletest.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/googletest.cmake
 
   [custom]
   source: custom/api.cmake
@@ -71,13 +71,13 @@ The names of the other sections do not matter to Autocmake. You could name them
   min_cmake_version: 2.8
 
   [one]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/fc.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/fc.cmake
 
   [two]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/cc.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/cc.cmake
 
   [whatever]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/cxx.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/cxx.cmake
 
 But it would not make much sense. It is better to choose names that are
 meaningful to you.
@@ -163,7 +163,7 @@ The preferred way to extend ``CMakeLists.txt`` is by editing ``autocmake.cfg``
 and using the ``source`` option::
 
   [fc]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/fc.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/fc.cmake
 
 This will download ``fc.cmake`` and include it in ``CMakeLists.txt``.
 
@@ -175,8 +175,8 @@ You can also include local CMake modules, e.g.::
 It is also OK to include several modules at once::
 
   [flags]
-  source: https://github.com/scisoft/autocmake/raw/master/compilers/GNU.CXX.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/compilers/GNU.CXX.cmake
-          https://github.com/scisoft/autocmake/raw/master/compilers/Intel.CXX.cmake
+          https://github.com/coderefinery/autocmake/raw/master/compilers/Intel.CXX.cmake
 
 The modules will be included in the same order as they appear in ``autocmake.cfg``.
 
@@ -187,7 +187,7 @@ Fetching files without including them in CMakeLists.txt
 Sometimes you want to fetch a file without including it in ``CMakeLists.txt``.
 This can be done with the ``fetch`` option.  This is for instance done by the
 ``git_info.cmake`` module (see
-https://github.com/scisoft/autocmake/blob/master/modules/git_info/git_info.cmake#L10-L11).
+https://github.com/coderefinery/autocmake/blob/master/modules/git_info/git_info.cmake#L10-L11).
 
 If ``fetch`` is invoked in ``autocmake.cfg``, then the fetched file is placed
 under ``downloaded/``.  If ``fetch`` is invoked from within a CMake module
@@ -241,7 +241,7 @@ for many core modules which come with own options once you have sourced them.
 The lines following ``# autocmake.cfg configuration::`` are
 understood by the ``update.py`` script to infer ``autocmake.cfg`` code from the
 documentation. As an example consider
-https://github.com/scisoft/autocmake/blob/master/modules/cc.cmake#L20-L25.
+https://github.com/coderefinery/autocmake/blob/master/modules/cc.cmake#L20-L25.
 Here, ``update.py`` will infer the configurations for ``docopt``, ``export``,
 and ``define``.
 
@@ -251,6 +251,6 @@ Overriding documented configurations
 
 Configurable documented defaults can be achieved using interpolations.  See for
 instance
-https://github.com/scisoft/autocmake/blob/master/modules/boost/boost.cmake#L33-L36.
+https://github.com/coderefinery/autocmake/blob/master/modules/boost/boost.cmake#L33-L36.
 These can be modified within ``autocmake.cfg`` with a dictionary, e.g.:
-https://github.com/scisoft/autocmake/blob/master/test/boost_libs/cmake/autocmake.cfg#L9
+https://github.com/coderefinery/autocmake/blob/master/test/boost_libs/cmake/autocmake.cfg#L9

doc/developers/customizing-modules.rst

@@ -38,9 +38,9 @@ Overriding defaults
 -------------------
 
 Some modules use interpolations to set defaults, see for instance
-https://github.com/scisoft/autocmake/blob/master/modules/boost/boost.cmake#L33-L36.
+https://github.com/coderefinery/autocmake/blob/master/modules/boost/boost.cmake#L33-L36.
 These can be modified within ``autocmake.cfg``, e.g.:
-https://github.com/scisoft/autocmake/blob/master/test/boost_libs/cmake/autocmake.cfg#L9
+https://github.com/coderefinery/autocmake/blob/master/test/boost_libs/cmake/autocmake.cfg#L9
 
 
 Create own CMake modules
@@ -54,5 +54,5 @@ Contribute customizations to the "standard library"
 
 If you think that your customization will be useful for other users as well,
 you may consider contributing the changes directly to
-https://github.com/scisoft/autocmake/. We very much encourage such
+https://github.com/coderefinery/autocmake/. We very much encourage such
 contributions. But we also strive for generality and portability.

doc/developers/example.rst

@@ -25,7 +25,7 @@ Now we create ``cmake/`` and fetch ``update.py``::
 
   $ mkdir cmake
   $ cd cmake/
-  $ wget https://raw.githubusercontent.com/scisoft/autocmake/master/update.py
+  $ wget https://raw.githubusercontent.com/coderefinery/autocmake/master/update.py
   $ python update.py --self
 
 Now from top-level our file tree looks like this::
@@ -50,13 +50,13 @@ Now we edit ``cmake/autocmake.cfg`` to look like this::
   min_cmake_version: 2.8
 
   [fc]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/fc.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/fc.cmake
 
   [cc]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/cc.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/cc.cmake
 
   [src]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/src.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/src.cmake
 
 What we have specified here is the project name and that we wish Fortran and C
 support. The ``src.cmake`` module tells CMake to include a ``src/CMakeLists.txt``.

doc/developers/faq.rst

@@ -107,7 +107,7 @@ overwritten at some point.  A good standard is to organize your sources under
 can include the latter in ``autocmake.cfg`` using::
 
   [src]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/src.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/src.cmake
 
 If you really don't like to do it this way, you can describe your sources and
 targets in a custom module in a local file and include it like this::

doc/developers/updating-modules.rst

@@ -21,10 +21,10 @@ rather fetch an older version, for example with the hash ``abcd123``. To
 achieve this, instead of::
 
   [foo]
-  source: https://github.com/scisoft/autocmake/raw/master/modules/foo.cmake
+  source: https://github.com/coderefinery/autocmake/raw/master/modules/foo.cmake
 
 pin the version to ``abcd123`` (you do not need to specify the full Git hash, a unique
 beginning will do)::
 
   [foo]
-  source: https://github.com/scisoft/autocmake/raw/abcd123/modules/foo.cmake
+  source: https://github.com/coderefinery/autocmake/raw/abcd123/modules/foo.cmake

doc/extract_rst.py

@@ -73,7 +73,7 @@ def main():
             if s_out != '':
                 output.append('\n\n%s' % file_name)
                 output.append('-'*len(file_name))
-                output.append('`[Source code] <https://github.com/scisoft/autocmake/blob/master/modules/%s>`__' % full_file_name)
+                output.append('`[Source code] <https://github.com/coderefinery/autocmake/blob/master/modules/%s>`__' % full_file_name)
                 output.append(s_out)
 
     with open(os.path.join(THIS_DIR, 'module-reference.rst'), 'w') as f:

modules/boost/boost.cmake

@@ -9,7 +9,7 @@
 #
 #   [boost]
 #   override: {'major': 1, 'minor': 59, 'patch': 0, 'components': 'chrono;timer;system'}
-#   source: https://github.com/scisoft/autocmake/raw/master/modules/boost/boost.cmake
+#   source: https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost.cmake
 #
 # Cross-dependencies between required components are not checked for.
 # For example, Boost.Timer depends on Boost.Chrono and Boost.System thus you
@@ -49,13 +49,13 @@
 #   minor=48
 #   patch=0
 #   components=''
-#   fetch: https://github.com/scisoft/autocmake/raw/master/modules/boost/boost_unpack.cmake
+#   fetch: https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost_unpack.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/boost/boost_userconfig.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost_userconfig.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/boost/boost_configure.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost_configure.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/boost/boost_build.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost_build.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/boost/boost_install.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost_install.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/boost/boost_headers.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost_headers.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/boost/boost_cleanup.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/boost/boost_cleanup.cmake
 #          http://sourceforge.net/projects/boost/files/boost/%(major)s.%(minor)s.%(patch)s/boost_%(major)s_%(minor)s_%(patch)s.zip
 #   docopt: --boost-headers=<BOOST_INCLUDEDIR> Include directories for Boost [default: ''].
 #           --boost-libraries=<BOOST_LIBRARYDIR> Library directories for Boost [default: ''].

modules/git_info/git_info.cmake

@@ -7,8 +7,8 @@
 #
 # autocmake.cfg configuration::
 #
-#   fetch: https://github.com/scisoft/autocmake/raw/master/modules/git_info/git_info_sub.cmake
+#   fetch: https://github.com/coderefinery/autocmake/raw/master/modules/git_info/git_info_sub.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/git_info/git_info.h.in
+#          https://github.com/coderefinery/autocmake/raw/master/modules/git_info/git_info.h.in
 
 # CMAKE_CURRENT_LIST_DIR is undefined in CMake 2.8.2
 # see https://public.kitware.com/Bug/print_bug_page.php?bug_id=11675

modules/math/accelerate.cmake

@@ -12,8 +12,8 @@
 #
 #   docopt: --accelerate Find and link to ACCELERATE [default: False].
 #   define: '-DENABLE_ACCELERATE=%s' % arguments['--accelerate']
-#   fetch: https://github.com/scisoft/autocmake/raw/master/modules/find/find_libraries.cmake
+#   fetch: https://github.com/coderefinery/autocmake/raw/master/modules/find/find_libraries.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/find/find_include_files.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/find/find_include_files.cmake
 
 option(ENABLE_ACCELERATE "Find and link to ACCELERATE" OFF)
 

modules/math/cblas.cmake

@@ -12,8 +12,8 @@
 #
 #   docopt: --cblas Find and link to CBLAS [default: False].
 #   define: '-DENABLE_CBLAS=%s' % arguments['--cblas']
-#   fetch: https://github.com/scisoft/autocmake/raw/master/modules/find/find_libraries.cmake
+#   fetch: https://github.com/coderefinery/autocmake/raw/master/modules/find/find_libraries.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/find/find_include_files.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/find/find_include_files.cmake
 
 option(ENABLE_CBLAS "Find and link to CBLAS" OFF)
 

modules/math/lapacke.cmake

@@ -12,8 +12,8 @@
 #
 #   docopt: --lapacke Find and link to LAPACKE [default: False].
 #   define: '-DENABLE_LAPACKE=%s' % arguments['--lapacke']
-#   fetch: https://github.com/scisoft/autocmake/raw/master/modules/find/find_libraries.cmake
+#   fetch: https://github.com/coderefinery/autocmake/raw/master/modules/find/find_libraries.cmake
-#          https://github.com/scisoft/autocmake/raw/master/modules/find/find_include_files.cmake
+#          https://github.com/coderefinery/autocmake/raw/master/modules/find/find_include_files.cmake
 
 option(ENABLE_LAPACKE "Find and link to LAPACKE" OFF)
 

update.py

@@ -30,7 +30,7 @@ else:
             sys.exit(-1)
 
 
-AUTOCMAKE_GITHUB_URL = 'https://github.com/scisoft/autocmake'
+AUTOCMAKE_GITHUB_URL = 'https://github.com/coderefinery/autocmake'
 
 # ------------------------------------------------------------------------------